PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034004t1
Common NameTCM_034004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 497aa    MW: 51737.1 Da    PI: 9.1895
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034004t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056991123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Thecc1EG034004t1 69 FVCEICNKGFQRDQNLQLHRRGH 91
                      89*******************88 PP

2zf-C2H215.84.1e-05145167123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC+ C+k +  +s+ k H++t+
  Thecc1EG034004t1 145 WKCERCSKKYAVQSDWKAHMKTC 167
                       58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-76891No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496991IPR007087Zinc finger, C2H2
PfamPF121717.9E-56991IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355220110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-5133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.76E-7140166No hitNo description
SMARTSM0035577145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MVELENSSPM TVSTASGEAS ASSSGNQIQG TQPTGGGPPK KKRNLPGMPD PDAEVIALSP  60
KSLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSKEIRKRVY VCPEPSCVHH  120
NPARALGDLT GIKKHFCRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGTR EYKCDCGTIF  180
SRRDSFITHR AFCDALAEES ARAQTLAIAN TEGNVNVSGN GNGNGKTMVG GAAATSPPPQ  240
PLTPSTASVV SPGLSIQSSE IPDNPMGLSP PTPAATSTST SNSNVFASIF APNSQPSKIP  300
APSPIFRSAA PLERTSLSLS SPLYLSNNGS SIFTGPEHDH CHYAPSPQPA MSATALLQKA  360
AQMGAAASNP SLLRGLGLAV SSTSTAGQDP NVKPESSSLT AGLGLGLPSN GSSNLTDHMM  420
DPSSLFGNKP TTLDLLGLGM GDGGASSNGL SALLTSFGGG FNVGAATTSY AAGSGSSPRE  480
TWEGAPERKP NGPAML*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017487.10.0C2H2-like zinc finger protein
SwissprotQ9SCQ61e-149IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A061FDF70.0A0A061FDF7_THECC; C2H2-like zinc finger protein
STRINGVIT_18s0001g12220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-111C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]